Reporter metabolites
Input model:
[?]
Fileformat
[?]
Expression File
[?]
Email (Optional)
[?]

Run

E-mail

Enter your E-mail Id for getting the result in your mail.

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Expression file

A text file with a cell array of gene names matching with the genes in the model and their p-values for the differential expression profiles.

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File format

You can select between Excel, SBML in Raven or Cobra format or simply choose Autodetect and the tool will automatically detect the uploaded format.

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Input model

The input is a GEM in Excel or SBML format (Cobra or Raven format). To see some examples of the format go to Models/Download.

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REPORTER METABOLITES

This tool identifies those metabolites around which transcriptional changes occur.

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General Instructions

Click "[?]" to display instructions here, or navigate through the links below.

Tool description
Input instructions
Output instructions

Example files to download

Model file
Expression file

Click Load Example files and hit Run

Input Instructions

Along with the model, in order to run this function it is necessary to provide as an input a text file with a cell array of gene names matching with the genes in the model and their p-values for the differential expression profiles.

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Output description

The function prints the top ten reporter metabolites.

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Online tools powered by RAVEN

Citations
1) Agren R, Liu L, Shoaie S, Vongsangnak W, Nookaew I, Nielsen J (2013) The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum. PLoS Comput. Biol., 9, e1002980.
A * indicates that these authors contributed equally to the work.