GEM Overview
Input model:
[?]
Fileformat
[?]
Email (Optional)
[?]

Run

E-mail

Enter your E-mail Id for getting the result in your mail.

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File format

You can select between Excel, SBML in Raven or Cobra format or simply choose Autodetect and the tool will automatically detect the uploaded format.

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Input model

The input is a GEM in Excel or SBML format (Cobra or Raven format). To see some examples of the format go to Models/Download.

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GEM Overview

GEM Overview provides the summary information of the model including the number of genes, reactions and metabolites for each compartment and Exchange reactions. It also tells us about the metabolites that can be produced or consumed by the model.

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General Instructions

Click "[?]" to display instructions here, or navigate through the links below.

Tool description
Input instructions
Output description

Example file to download

Model file
Click Load model file and hit Run

Input Instructions

For this function, the input is a GEM in Excel or SBML format easily uploaded by the user directly on the interface.

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Output description

The output returns several options of informative screens (Summary, Exchange Reactions, Metabolite Produced, Metabolites Consumed and Script Progress).

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Online tools powered by RAVEN

Citations
1) Agren R, Liu L, Shoaie S, Vongsangnak W, Nookaew I, Nielsen J (2013) The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum. PLoS Comput. Biol., 9, e1002980.
A * indicates that these authors contributed equally to the work.