< Master index Index for RAVEN >

Index for RAVEN

Matlab files in this directory:

 SBMLFromExcelSBMLFromExcel
 addExchangeRxnsaddExchangeRxns
 addGenesaddGenes
 addMetsaddMets
 addRxnsaddRxns
 addTransportaddTransport
 analyzeSamplinganalyzeSampling
 canConsumecanConsume
 canProducecanProduce
 changeRxnschangeRxns
 checkInstallationcheckInstallation
 checkProductioncheckProduction
 checkRxncheckRxn
 checkSolutionChecks if a solution from Mosek is feasible and optimal
 checkTaskscheckTasks
 colorPathwaycolorPathway
 compareModelscompareModels
 constructEquationsconstructEquations
 constructMultiFastaconstructMultiFasta
 constructPathwayFromCelldesignerconstructPathwayFromCelldesigner
 constructSconstructS
 consumeSomethingconsumeSomething
 contractModelcontractModel
 convertToIrrevconvertToIrrev
 copyToCompscopyToComps
 downloadKEGGdownloadKEGG
 drawMapdrawMap
 drawPathwaydrawPathway
 expandModelexpandModel
 exportModelexportModel
 exportModelToSIFexportModelToSIF
 exportToExcelFormatexportToExcelFormat
 fillGapsfillGaps
 findGeneDeletionsfindGeneDeletions
 fitParametersfitParameters
 fitTasksfitTasks
 followChangedfollowChanged
 followFluxesfollowFluxes
 gapReportgapReport
 getAllSubGraphsgetAllSubGraphs
 getAllowedBoundsgetAllowedBounds
 getBlastgetBlast
 getBlastFromExcelgetBlastFromExcel
 getColorCodesgetColorCodes
 getElementalBalancegetElementalBalance
 getEssentialRxnsgetEssentialRxns
 getExchangeRxnsgetExchangeRxns
 getExpressionStructuregetExpressionStructure
 getFluxZgetFluxZ
 getGenesFromKEGGgetGenesFromKEGG
 getINITModelgetINITModel
 getIndexesgetIndexes
 getKEGGModelForOrganismgetKEGGModelForOrganism
 getMILPParamsgetMILPParams
 getMetsFromKEGGgetMetsFromKEGG
 getMetsInCompgetMetsInComp
 getMinNrFluxesgetMinNrFluxes
 getModelFromHomologygetModelFromHomology
 getModelFromKEGGgetModelFromKEGG
 getObjectiveStringgetObjectiveString
 getPathwayDimensionsgetPathwayDimensions
 getPhylDistgetPhylDist
 getRxnsFromKEGGgetRxnsFromKEGG
 getTransportRxnsgetTransportRxns
 getWoLFScoresgetWoLFScores
 haveFluxhaveFlux
 importModelimportModel
 makeSomethingmakeSomething
 mapCompartmentsmapCompartments
 mapPathwayRxnNamesmapPathwayRxnNames
 markPathwayWithExpressionmarkPathwayWithExpression
 markPathwayWithFluxesmarkPathwayWithFluxes
 mergeCompartmentsmergeCompartments
 mergeModelsmergeModels
 parseFormulasparseFormulas
 parseHPAparseHPA
 parseRxnEquparseRxnEqu
 parseScoresparseScores
 parseTaskListparseTaskList
 permuteModelpermuteModel
 plotAdditionalInfoplotAdditionalInfo
 plotLabelsplotLabels
 predictLocalizationpredictLocalization
 printFluxesprintFluxes
 printModelprintModel
 printModelStatsprintModelStats
 qMOMAqMOMA
 randomSamplingrandomSampling
 removeBadRxnsremoveBadRxns
 removeGenesremoveGenes
 removeMetsremoveMets
 removeRxnsremoveRxns
 reporterMetsreporterMets
 runINITrunINIT
 scoreModelscoreRxns
 setParamsetParam
 setTitleplotLabels
 simplifyModelsimplifyModel
 solveLPsolveLP
 solveQPsolveQP
 sortModelsortModel
 trimPathwaytrimPathway

Subsequent directories:


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